Acta Vet. Brno 2020, 89: 273-282

https://doi.org/10.2754/avb202089030273

A complex approach to a complex problem: the use of whole-genome sequencing in monitoring avian-pathogenic Escherichia coli – a review

Aneta Papoušková, Alois Čížek

University of Veterinary and Pharmaceutical Sciences Brno, Faculty of Veterinary Medicine, Department of Infectious Diseases and Microbiology, Brno, Czech Republic

Received July 7, 2020
Accepted September 14, 2020

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  • Kromann Sofie, Baig Sharmin, Olsen Rikke Heidemann, Edslev Sofie Marie, Thøfner Ida, Bojesen Anders Miki, Jensen Henrik Elvang, Stegger Marc: Dramatic increase in slaughter condemnations due to Escherichia coli ST23 and ST101 within the Danish broiler production. Veterinary Microbiology 2023, 280, 109696. <https://doi.org/10.1016/j.vetmic.2023.109696>
  • Sanderson Haley, McCarthy Madeline C., Nnajide Chinenye R., Sparrow Jessica, Rubin Joseph E., Dillon Jo-Anne R., White Aaron P.: Identification of plasmids in avian-associated Escherichia coli using nanopore and illumina sequencing. BMC Genomics 2023, 24. <https://doi.org/10.1186/s12864-023-09784-6>
  • Šenk David, Papoušková Aneta, Masaříková Martina, Palkovičová Jana, Čížek Alois: Impact of commercial and autogenous Escherichia coli vaccine combination on broiler breeder stock performance, gross pathology, and diversity of Escherichia coli isolates. Acta Vet. Brno 2022, 91, 383. <https://doi.org/10.2754/avb202291040383>
  • Kang Hyo Jung, Lim Suk-Kyung, Lee Young Ju: Genetic characterization of third- or fourth-generation cephalosporin-resistant avian pathogenic Escherichia coli isolated from broilers. Front. Vet. Sci. 2022, 9. <https://doi.org/10.3389/fvets.2022.1055320>
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